Guan Lab

Department of Computational Medicine & Bioinformatics
Found 67 results
Author Title Type [ Year(Desc)]
2018
Li H, Panwar B, Omenn GS, Guan Y.  2018.  Accurate Prediction of Personalized Olfactory Perception from Large-Scale Chemoinformatic Features.. Gigascience. Feb 1;7(2). doi: 10.1093/gigascience/gix127.
Li H-D, Bai T, Sandford E, Burmeister M, Guan Y.  2018.  BaiHui: Cross-species Brain-specific Network Built with Hundreds of Hand-curated Datasets. Bioinformatics. (Dec 5. doi: 10.1093/bioinformatics/bty1001)
Duda M, Zhang H, Li HD, Wall DP, Burmeister M, Guan Y.  2018.  Brain-specific functional relationship networks inform autism spectrum disorder gene prediction.. Transl Psychiatry. . 8(1(56))
Siddiqui O, Zhang H, Guan Y, Omenn G.  2018.  Chromosome 17 Missing Proteins: Recent Progress and Future Directions as part of the Next-50MP Challenge. Journal of Proteome Research. doi: 10.1021/acs.jproteome.8b00442. [Epub ahead of print]
Al'Aref SJ, Anchouche K, Singh G, Slomka PJ, Kolli KK, Kumar A, others, Guan Y, Min JK.  2018.  Clinical applications of machine learning in cardiovascular disease and its relevance to cardiac imaging.. Eur Heart J. Jul 27. doi: 10.1093/eurheartj/ehy404.
Causey JL, Ashby C, Walker K, Wang ZP, Yang M, Guan Y, Moore JH, Huang X.  2018.  DNAp: A Pipeline for DNA-seq Data Analysis. Sci Rep.. (May 1;8(1):6793. doi: 10.1038/s41598-018-25022-6.)
Hosoya T, Li H, Ku CJ, Wu Q, Guan Y, Engel JD.  2018.  High throughput single cell sequencing of both T-cell-receptor-beta alleles. Journal of Immunology. (Dec 1;201(11):3465-3470. doi: 10.4049/jimmunol.1800774. Epub 2018 Oct 31.)
Tang M, Gao C, Goutman S, Kalinin A, Mukherjee B, Guan Y, Dinov I.  2018.  Model-based and Model-free Techniques for Amyotrophic Lateral Sclerosis Diagnostic Prediction and Patient Clustering. Neuroinformatics. Nov 20. doi: 10.1007/s12021-018-9406-9
Li H, Li T, Quang D, Guan Y.  2018.  Network propagation predicts drug synergy in cancers. Cancer Research. Sep 15;78(18):5446-5457. doi: 10.1158/0008-5472.CAN-18-0740. Epub 2018 Jul 27.
Guan Y, Li T, Zhang HJ, Zhu F, Omenn GS.  2018.  Prioritizing Predictive Biomarkers for Gene Essentiality in Cancer Cells with mRNA Expression Data and DNA Copy Number Profile. Bioinformatics. 2018 Dec 1;34(23):3975-3982. doi: 10.1093/bioinformatics/bty467.
Zhang H, Zhu F, Dodge H, Higgins G, Omenn G, Guan Y.  2018.  A similarity-based approach to leverage multi-cohort medical data on the diagnosis and prognosis of Alzheimer's disease. Gigascience. Jul 11. doi: 10.1093/gigascience/giy085
Li H, Hu S, Neamati N, Guan Y.  2018.  TAIJI: Approaching Experimental Replicates-Level Accuracy for Drug Synergy Prediction. Bioinformatics. Nov 21. doi: 10.1093/bioinformatics/bty955
Quang D, Guan Y, Parker SCJ.  2018.  YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU. Bioinformatics. Oct 15;34(20):3578-3580. doi: 10.1093/bioinformatics/bty396
2019
Li H, Quang D, Guan Y.  2019.  Anchor: Trans-cell Type Prediction of Transcription Factor Binding Sites. Genome Research. 2019 Feb;29(2):281-292. doi: 10.1101/gr.237156.118. Epub 2018 Dec 19.
Li D, Balamurugan S, Yang YF, Zhang JW, Huang D, Zou LG, Yang WD, Liu JS, Guan Y, Li HY.  2019.  Transcriptional regulation of microalgae for concurrent lipid overproduction and secretion. Science Advances. Jan 30;5(1):eaau3795. doi: 10.1126/sciadv.aau3795. eCollection 2019 Jan.
Guan Y.  2019.  Waking up to data challenges. Nature Machine Intelligence. Jan 7 1 (1), 67
In Press
Menden MP, Wang D, Mason M, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeong M, Wolfinger R et al..  In Press.  A cancer pharmacogenomic screen powering crowd-sourced advancement of drug combination prediction. Nature Communications.

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